J4_1NJN_010

3D structure

PDB id

1NJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGAAG*CACC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1NJN_010 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.2463

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

1NJN|1|0|C|308
1NJN|1|0|G|309
1NJN|1|0|A|310
1NJN|1|0|A|311
1NJN|1|0|G|312
*
1NJN|1|0|C|327
1NJN|1|0|A|328
1NJN|1|0|C|329
1NJN|1|0|C|330
*
1NJN|1|0|G|334
1NJN|1|0|A|335
1NJN|1|0|A|336
*
1NJN|1|0|U|348
1NJN|1|0|G|349
1NJN|1|0|U|350
1NJN|1|0|A|351
1NJN|1|0|G|352

Current chains

Chain 0

23S ribosomal RNA

Nearby chains