J4_1NJO_004

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGUUC*GGAAAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

1NJO|1|0|G|1324, 1NJO|1|0|U|1325, 1NJO|1|0|A|1354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1NJO_004 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.3511

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.2

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

1NJO|1|0|G|1323
1NJO|1|0|G|1324
1NJO|1|0|U|1325
1NJO|1|0|U|1326
1NJO|1|0|C|1327
*
1NJO|1|0|G|1351
1NJO|1|0|G|1352
1NJO|1|0|A|1353
1NJO|1|0|A|1354
1NJO|1|0|A|1355
1NJO|1|0|G|1356
*
1NJO|1|0|C|1417
1NJO|1|0|C|1418
*
1NJO|1|0|G|1613
1NJO|1|0|C|1614
1NJO|1|0|C|1615
1NJO|1|0|C|1616
1NJO|1|0|G|1617
1NJO|1|0|U|1618
1NJO|1|0|A|1619
1NJO|1|0|C|1620

Current chains

Chain 0

23S ribosomal RNA

Nearby chains