J4_1NJO_009

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GAGU*AAC*GGAACG*CAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1NJO_009 not in the Motif Atlas

Homologous match to J4_7A0S_010

Geometric discrepancy: 0.1644

The information below is about J4_7A0S_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_54165.1

Basepair signature

cWW-F-F-F-cWW-cWW-cWW-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

1NJO|1|0|G|2622
1NJO|1|0|A|2623
1NJO|1|0|G|2624
1NJO|1|0|U|2625
*
1NJO|1|0|A|2653
1NJO|1|0|A|2654
1NJO|1|0|C|2655
*
1NJO|1|0|G|2711
1NJO|1|0|G|2712
1NJO|1|0|A|2713
1NJO|1|0|A|2714
1NJO|1|0|C|2715
1NJO|1|0|G|2716
*
1NJO|1|0|C|2748
1NJO|1|0|A|2749
1NJO|1|0|G|2750
1NJO|1|0|C|2751

Current chains

Chain 0

23S ribosomal RNA

Nearby chains