J4_1NJP_004

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUUC*GGAAAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

1NJP|1|0|G|1324, 1NJP|1|0|U|1325, 1NJP|1|0|A|1354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1NJP_004 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.3517

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.2

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

1NJP|1|0|G|1323
1NJP|1|0|G|1324
1NJP|1|0|U|1325
1NJP|1|0|U|1326
1NJP|1|0|C|1327
*
1NJP|1|0|G|1351
1NJP|1|0|G|1352
1NJP|1|0|A|1353
1NJP|1|0|A|1354
1NJP|1|0|A|1355
1NJP|1|0|G|1356
*
1NJP|1|0|C|1417
1NJP|1|0|C|1418
*
1NJP|1|0|G|1613
1NJP|1|0|C|1614
1NJP|1|0|C|1615
1NJP|1|0|C|1616
1NJP|1|0|G|1617
1NJP|1|0|U|1618
1NJP|1|0|A|1619
1NJP|1|0|C|1620

Current chains

Chain 0

23S ribosomal RNA

Nearby chains