J4_1NJP_009

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAGU*AAC*GGAACG*CAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1NJP_009 not in the Motif Atlas

Homologous match to J4_7A0S_010

Geometric discrepancy: 0.1645

The information below is about J4_7A0S_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_54165.1

Basepair signature

cWW-F-F-F-cWW-cWW-cWW-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

1NJP|1|0|G|2622
1NJP|1|0|A|2623
1NJP|1|0|G|2624
1NJP|1|0|U|2625
*
1NJP|1|0|A|2653
1NJP|1|0|A|2654
1NJP|1|0|C|2655
*
1NJP|1|0|G|2711
1NJP|1|0|G|2712
1NJP|1|0|A|2713
1NJP|1|0|A|2714
1NJP|1|0|C|2715
1NJP|1|0|G|2716
*
1NJP|1|0|C|2748
1NJP|1|0|A|2749
1NJP|1|0|G|2750
1NJP|1|0|C|2751

Current chains

Chain 0

23S ribosomal RNA

Nearby chains