J4_1NJP_010

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAAG*CACC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1NJP_010 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.2447

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

1NJP|1|0|C|308
1NJP|1|0|G|309
1NJP|1|0|A|310
1NJP|1|0|A|311
1NJP|1|0|G|312
*
1NJP|1|0|C|327
1NJP|1|0|A|328
1NJP|1|0|C|329
1NJP|1|0|C|330
*
1NJP|1|0|G|334
1NJP|1|0|A|335
1NJP|1|0|A|336
*
1NJP|1|0|U|348
1NJP|1|0|G|349
1NJP|1|0|U|350
1NJP|1|0|A|351
1NJP|1|0|G|352

Current chains

Chain 0

23S ribosomal RNA

Nearby chains