J4_1NKW_006

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

1NKW|1|0|A|1954

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1NKW_006 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.5089

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

1NKW|1|0|C|1825
1NKW|1|0|U|1826
1NKW|1|0|G|1827
*
1NKW|1|0|C|1888
1NKW|1|0|G|1889
*
1NKW|1|0|C|1907
1NKW|1|0|C|1908
1NKW|1|0|U|1909
1NKW|1|0|A|1910
1NKW|1|0|A|1911
1NKW|1|0|G|1912
1NKW|1|0|G|1913
1NKW|1|0|U|1914
1NKW|1|0|A|1915
1NKW|1|0|G|1916
*
1NKW|1|0|C|1950
1NKW|1|0|G|1951
1NKW|1|0|A|1952
1NKW|1|0|A|1953
1NKW|1|0|A|1954
1NKW|1|0|G|1955

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2