J4_1NKW_007

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAAGG*CUUGAC*GGG*CGG

Length

18 nucleotides

Bulged bases

1NKW|1|0|A|2265, 1NKW|1|0|A|2267, 1NKW|1|0|G|2324, 1NKW|1|0|G|2361

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NKW|1|0|C|2264
1NKW|1|0|A|2265
1NKW|1|0|A|2266
1NKW|1|0|A|2267
1NKW|1|0|G|2268
1NKW|1|0|G|2269
*
1NKW|1|0|C|2321
1NKW|1|0|U|2322
1NKW|1|0|U|2323
1NKW|1|0|G|2324
1NKW|1|0|A|2325
1NKW|1|0|C|2326
*
1NKW|1|0|G|2349
1NKW|1|0|G|2350
1NKW|1|0|G|2351
*
1NKW|1|0|C|2360
1NKW|1|0|G|2361
1NKW|1|0|G|2362

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L33

Chain 3

50S ribosomal protein L35

Chain U

50S ribosomal protein L27