J4_1NWY_006

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

1NWY|1|0|A|1954

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1NWY_006 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.5111

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

1NWY|1|0|C|1825
1NWY|1|0|U|1826
1NWY|1|0|G|1827
*
1NWY|1|0|C|1888
1NWY|1|0|G|1889
*
1NWY|1|0|C|1907
1NWY|1|0|C|1908
1NWY|1|0|U|1909
1NWY|1|0|A|1910
1NWY|1|0|A|1911
1NWY|1|0|G|1912
1NWY|1|0|G|1913
1NWY|1|0|U|1914
1NWY|1|0|A|1915
1NWY|1|0|G|1916
*
1NWY|1|0|C|1950
1NWY|1|0|G|1951
1NWY|1|0|A|1952
1NWY|1|0|A|1953
1NWY|1|0|A|1954
1NWY|1|0|G|1955

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain A

ribosomal protein L2