J4_1OND_001

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAAG*CACC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1OND_001 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.1789

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

1OND|1|0|C|308
1OND|1|0|G|309
1OND|1|0|A|310
1OND|1|0|A|311
1OND|1|0|G|312
*
1OND|1|0|C|327
1OND|1|0|A|328
1OND|1|0|C|329
1OND|1|0|C|330
*
1OND|1|0|G|334
1OND|1|0|A|335
1OND|1|0|A|336
*
1OND|1|0|U|348
1OND|1|0|G|349
1OND|1|0|U|350
1OND|1|0|A|351
1OND|1|0|G|352

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains