J4_1OND_002

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

1OND|1|0|G|1284, 1OND|1|0|A|1285, 1OND|1|0|U|1286, 1OND|1|0|A|1287, 1OND|1|0|A|1288, 1OND|1|0|C|1663, 1OND|1|0|G|1664

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1OND_002 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.2395

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

1OND|1|0|C|1283
1OND|1|0|G|1284
1OND|1|0|A|1285
1OND|1|0|U|1286
1OND|1|0|A|1287
1OND|1|0|A|1288
1OND|1|0|A|1289
*
1OND|1|0|U|1307
1OND|1|0|C|1308
*
1OND|1|0|G|1662
1OND|1|0|C|1663
1OND|1|0|G|1664
1OND|1|0|C|1665
*
1OND|1|0|G|1992
1OND|1|0|G|1993

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain Q

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32