J4_1OND_005

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1OND_005 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.1447

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

1OND|1|0|G|1763
1OND|1|0|A|1764
1OND|1|0|C|1765
1OND|1|0|U|1766
1OND|1|0|G|1767
*
1OND|1|0|C|1779
1OND|1|0|A|1780
1OND|1|0|C|1781
1OND|1|0|A|1782
1OND|1|0|G|1783
*
1OND|1|0|U|1819
1OND|1|0|G|1820
1OND|1|0|A|1821
1OND|1|0|C|1822
*
1OND|1|0|G|1958
1OND|1|0|U|1959
1OND|1|0|A|1960
1OND|1|0|A|1961
1OND|1|0|C|1962

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains