J4_1Q7Y_007

3D structure

PDB id

1Q7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of CCdAP-Puromycin bound at the Peptidyl transferase center of the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GACUG*CAUAG*UGAAU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1Q7Y_007 not in the Motif Atlas

Homologous match to J4_4V9F_007

Geometric discrepancy: 0.0365

The information below is about J4_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

1Q7Y|1|A|G|1828
1Q7Y|1|A|A|1829
1Q7Y|1|A|C|1830
1Q7Y|1|A|U|1831
1Q7Y|1|A|G|1832
*
1Q7Y|1|A|C|1844
1Q7Y|1|A|A|1845
1Q7Y|1|A|U|1846
1Q7Y|1|A|A|1847
1Q7Y|1|A|G|1848
*
1Q7Y|1|A|U|1883
1Q7Y|1|A|G|1884
1Q7Y|1|A|A|1885
1Q7Y|1|A|A|1886
1Q7Y|1|A|U|1887
*
1Q7Y|1|A|A|2015
1Q7Y|1|A|U|2016
1Q7Y|1|A|U|2017
1Q7Y|1|A|A|2018
1Q7Y|1|A|A|2019
1Q7Y|1|A|C|2020

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain 1

L37Ae 50S ribosomal protein

Chain C

50S ribosomal protein L2P