J4_1Q81_001

3D structure

PDB id

1Q81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of minihelix with 3' puromycin bound to A-site of the 50S ribosomal subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

1Q81|1|A|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1Q81_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.044

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

1Q81|1|A|C|239
1Q81|1|A|C|240
*
1Q81|1|A|G|379
1Q81|1|A|A|380
1Q81|1|A|G|381
1Q81|1|A|U|382
1Q81|1|A|A|383
1Q81|1|A|G|384
*
1Q81|1|A|C|405
1Q81|1|A|G|406
1Q81|1|A|A|407
1Q81|1|A|A|408
1Q81|1|A|U|409
1Q81|1|A|A|410
1Q81|1|A|A|411
1Q81|1|A|C|412
*
1Q81|1|A|G|428
1Q81|1|A|A|429
1Q81|1|A|A|430
1Q81|1|A|G|431

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain N

L15 Ribosomal Protein