J4_1Q86_001

3D structure

PDB id

1Q86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

1Q86|1|A|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1Q86_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0327

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

1Q86|1|A|C|239
1Q86|1|A|C|240
*
1Q86|1|A|G|379
1Q86|1|A|A|380
1Q86|1|A|G|381
1Q86|1|A|U|382
1Q86|1|A|A|383
1Q86|1|A|G|384
*
1Q86|1|A|C|405
1Q86|1|A|G|406
1Q86|1|A|A|407
1Q86|1|A|A|408
1Q86|1|A|U|409
1Q86|1|A|A|410
1Q86|1|A|A|411
1Q86|1|A|C|412
*
1Q86|1|A|G|428
1Q86|1|A|A|429
1Q86|1|A|A|430
1Q86|1|A|G|431

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain N

L15 Ribosomal Protein