J4_1Q86_007

3D structure

PDB id

1Q86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GACUG*CAUAG*UGAAU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1Q86_007 not in the Motif Atlas

Homologous match to J4_4V9F_007

Geometric discrepancy: 0.0252

The information below is about J4_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_07509.2

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

3

Unit IDs

1Q86|1|A|G|1828
1Q86|1|A|A|1829
1Q86|1|A|C|1830
1Q86|1|A|U|1831
1Q86|1|A|G|1832
*
1Q86|1|A|C|1844
1Q86|1|A|A|1845
1Q86|1|A|U|1846
1Q86|1|A|A|1847
1Q86|1|A|G|1848
*
1Q86|1|A|U|1883
1Q86|1|A|G|1884
1Q86|1|A|A|1885
1Q86|1|A|A|1886
1Q86|1|A|U|1887
*
1Q86|1|A|A|2015
1Q86|1|A|U|2016
1Q86|1|A|U|2017
1Q86|1|A|A|2018
1Q86|1|A|A|2019
1Q86|1|A|C|2020

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain 1

L37Ae 50S ribosomal protein

Chain C

50S ribosomal protein L2P