J4_1QVF_007

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACUG*CAUAG*UGAAU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1QVF_007 not in the Motif Atlas

Homologous match to J4_4V9F_007

Geometric discrepancy: 0.0196

The information below is about J4_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_07509.2

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

3

Unit IDs

1QVF|1|0|G|1828
1QVF|1|0|A|1829
1QVF|1|0|C|1830
1QVF|1|0|U|1831
1QVF|1|0|G|1832
*
1QVF|1|0|C|1844
1QVF|1|0|A|1845
1QVF|1|0|U|1846
1QVF|1|0|A|1847
1QVF|1|0|G|1848
*
1QVF|1|0|U|1883
1QVF|1|0|G|1884
1QVF|1|0|A|1885
1QVF|1|0|A|1886
1QVF|1|0|U|1887
*
1QVF|1|0|A|2015
1QVF|1|0|U|2016
1QVF|1|0|U|2017
1QVF|1|0|A|2018
1QVF|1|0|A|2019
1QVF|1|0|C|2020

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Y

L37Ae 50S ribosomal protein