J4_1QVF_008

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

1QVF|1|0|U|2012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1QVF_008 not in the Motif Atlas

Homologous match to J4_4V9F_008

Geometric discrepancy: 0.0367

The information below is about J4_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

1QVF|1|0|C|1889
1QVF|1|0|U|1890
1QVF|1|0|G|1891
*
1QVF|1|0|C|1946
1QVF|1|0|G|1947
*
1QVF|1|0|C|1965
1QVF|1|0|U|1966
1QVF|1|0|U|1967
1QVF|1|0|A|1968
1QVF|1|0|A|1969
1QVF|1|0|G|1970
1QVF|1|0|G|1971
1QVF|1|0|U|1972
1QVF|1|0|A|1973
1QVF|1|0|G|1974
*
1QVF|1|0|U|2008
1QVF|1|0|G|2009
1QVF|1|0|A|2010
1QVF|1|0|A|2011
1QVF|1|0|U|2012
1QVF|1|0|G|2013

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Y

L37Ae 50S ribosomal protein