J4_1QVG_001

3D structure

PDB id

1QVG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

1QVG|1|0|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1QVG_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0356

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

1QVG|1|0|C|239
1QVG|1|0|C|240
*
1QVG|1|0|G|379
1QVG|1|0|A|380
1QVG|1|0|G|381
1QVG|1|0|U|382
1QVG|1|0|A|383
1QVG|1|0|G|384
*
1QVG|1|0|C|405
1QVG|1|0|G|406
1QVG|1|0|A|407
1QVG|1|0|A|408
1QVG|1|0|U|409
1QVG|1|0|A|410
1QVG|1|0|A|411
1QVG|1|0|C|412
*
1QVG|1|0|G|428
1QVG|1|0|A|429
1QVG|1|0|A|430
1QVG|1|0|G|431

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain L

L15 Ribosomal Protein