J4_1QVG_008

3D structure

PDB id

1QVG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

1QVG|1|0|U|2012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1QVG_008 not in the Motif Atlas

Homologous match to J4_4V9F_008

Geometric discrepancy: 0.0443

The information below is about J4_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

1QVG|1|0|C|1889
1QVG|1|0|U|1890
1QVG|1|0|G|1891
*
1QVG|1|0|C|1946
1QVG|1|0|G|1947
*
1QVG|1|0|C|1965
1QVG|1|0|U|1966
1QVG|1|0|U|1967
1QVG|1|0|A|1968
1QVG|1|0|A|1969
1QVG|1|0|G|1970
1QVG|1|0|G|1971
1QVG|1|0|U|1972
1QVG|1|0|A|1973
1QVG|1|0|G|1974
*
1QVG|1|0|U|2008
1QVG|1|0|G|2009
1QVG|1|0|A|2010
1QVG|1|0|A|2011
1QVG|1|0|U|2012
1QVG|1|0|G|2013

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Y

L37Ae 50S ribosomal protein