J4_1SM1_003

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

GGUUC*GGAAAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

1SM1|1|0|G|1324, 1SM1|1|0|U|1325, 1SM1|1|0|A|1354, 1SM1|1|0|A|1355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1SM1_003 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.3692

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

1SM1|1|0|G|1323
1SM1|1|0|G|1324
1SM1|1|0|U|1325
1SM1|1|0|U|1326
1SM1|1|0|C|1327
*
1SM1|1|0|G|1351
1SM1|1|0|G|1352
1SM1|1|0|A|1353
1SM1|1|0|A|1354
1SM1|1|0|A|1355
1SM1|1|0|G|1356
*
1SM1|1|0|C|1417
1SM1|1|0|C|1418
*
1SM1|1|0|G|1613
1SM1|1|0|C|1614
1SM1|1|0|C|1615
1SM1|1|0|C|1616
1SM1|1|0|G|1617
1SM1|1|0|U|1618
1SM1|1|0|A|1619
1SM1|1|0|C|1620

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34

Chain R

50S RIBOSOMAL PROTEIN L23