Motif J4_77353.1 Version J4_77353.1 of this group appears in releases 4.0 to 4.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5	break		6		7		8		9		10	break		11		12	break		13		14		15		16		17		18		19		20	1-20	2-3	3-7	3-8	4-19	5-6	9-18	10-11	12-13
1	J4_8GLP_005	8GLP	0.0825	1	L5	LSU rRNA	G	2406	G	2407	U	2408	U	2409	C	2410	*	G	2434	G	2435	U	2436	A	2438	G	2439	*	U	2538	C	2539	*	G	2777	G	2778	C	2779	C	2780	G	2781	U	2782	A	2783	C	2784	cWW				cWW	cWW	tHW	cWW	cWW
2	J4_9AXU_004	9AXU	0.0628	1	2	LSU rRNA	G	1526	G	1527	U	1528	U	1529	C	1530	*	G	1554	G	1555	U	1556	A	1558	G	1559	*	C	1649	C	1650	*	G	1884	G	1885	U	1886	C	1887	G	1888	U	1889	A	1890	C	1891	cWW				cWW	cWW	tHW	cWW	cWW
3	J4_4V9F_004	4V9F	0.0672	1	0	LSU rRNA	G	1416	G	1417	U	1418	U	1419	C	1420	*	G	1444	G	1445	U	1446	A	1448	G	1449	*	C	1513	C	1514	*	G	1672	U	1673	C	1674	C	1675	G	1676	U	1677	A	1678	C	1679	cWW				cWW	cWW	tHW	cWW	cWW
4	J4_9E6Q_004	9E6Q	0.0000	1	1	LSU rRNA	G	1439	G	1440	U	1441	U	1442	U	1443	*	A	1467	G	1468	U	1469	A	1471	G	1472	*	C	1535	C	1536	*	G	1739	C	1740	C	1741	C	1742	G	1743	U	1744	A	1745	C	1746	cWW				cWW	cWW	tHW	cWW	cWW
5	J4_8B0X_008	8B0X	0.1171	1	a	LSU rRNA	G	1312	G	1313	U	1314	U	1315	C	1316	*	G	1340	G	1341	U	1342	A	1344	G	1345	*	C	1406	U	1407	*	A	1599	A	1600	U	1601	C	1602	G	1603	U	1604	A	1605	C	1606	cWW				cWW	cWW	tHW	cWW	cWW
6	J4_9DFE_004	9DFE	0.1465	1	1A	LSU rRNA	G	1310	G	1311	U	1312	U	1313	C	1314	*	G	1338	G	1339	U	1340	A	1342	G	1343	*	C	1404	U	1405	*	A	1597	C	1598	C	1599	C	1600	G	1601	U	1602	A	1603	C	1604	cWW	cSH			cWW	cWW	tHW	cWW	cWW
7	J4_4WF9_005	4WF9	0.1575	1	X	LSU rRNA	G	1347	U	1348	U	1349	U	1350	C	1351	*	G	1375	G	1376	U	1377	A	1379	G	1380	*	C	1441	C	1442	*	G	1641	C	1642	C	1643	C	1644	G	1645	U	1646	A	1647	C	1648	cWW		ntSW		cWW	cWW	tHW	cWW	cWW
8	J4_7A0S_005	7A0S	0.1647	1	X	LSU rRNA	G	1323	G	1324	U	1325	U	1326	C	1327	*	G	1351	G	1352	A	1353	A	1355	G	1356	*	C	1417	C	1418	*	G	1613	C	1614	C	1615	C	1616	G	1617	U	1618	A	1619	C	1620	cWW			ntWW	cWW	cWW	ntHW	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGUUCGGUCAGUC*GGCCGUAC	1
GGUUCGGUUAGCC*GGUCGUAC	1
GGUUCGGUUAGCC*GUCCGUAC	1
GGUUUAGUUAGCC*GCCCGUAC	1
GGUUCGGUGAGCU*AAUCGUAC	1
GGUUCGGUUAGCU*ACCCGUAC	1
GUUUCGGUUAGCC*GCCCGUAC	1
GGUUCGGAAAGCC*GCCCGUAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUUGUUA*CCCGUA	2
GUUGUCA*GCCGUA	1
GUUGUUA*GUCGUA	1
GUUGUUA*UCCGUA	1
GUUGUGA*AUCGUA	1
UUUGUUA*CCCGUA	1
GUUGAAA*CCCGUA	1

Release history

Release	4.0
Date	2025-08-13
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (8)
Basepair signature: cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Heat map statistics: Min 0.06 | Avg 0.12 | Max 0.21

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