J4_1SM1_008

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

GAGU*AAC*GGAACG*CAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1SM1_008 not in the Motif Atlas

Homologous match to J4_7A0S_010

Geometric discrepancy: 0.1558

The information below is about J4_7A0S_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_54165.1

Basepair signature

cWW-F-F-F-cWW-cWW-cWW-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

1SM1|1|0|G|2622
1SM1|1|0|A|2623
1SM1|1|0|G|2624
1SM1|1|0|U|2625
*
1SM1|1|0|A|2653
1SM1|1|0|A|2654
1SM1|1|0|C|2655
*
1SM1|1|0|G|2711
1SM1|1|0|G|2712
1SM1|1|0|A|2713
1SM1|1|0|A|2714
1SM1|1|0|C|2715
1SM1|1|0|G|2716
*
1SM1|1|0|C|2748
1SM1|1|0|A|2749
1SM1|1|0|G|2750
1SM1|1|0|C|2751

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3

Chain H

50S RIBOSOMAL PROTEIN L13

Chain I

50S RIBOSOMAL PROTEIN L14