J4_1VQ7_001

3D structure

PDB id

1VQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DCA' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

1VQ7|1|0|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1VQ7_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0275

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

1VQ7|1|0|C|239
1VQ7|1|0|C|240
*
1VQ7|1|0|G|379
1VQ7|1|0|A|380
1VQ7|1|0|G|381
1VQ7|1|0|U|382
1VQ7|1|0|A|383
1VQ7|1|0|G|384
*
1VQ7|1|0|C|405
1VQ7|1|0|G|406
1VQ7|1|0|A|407
1VQ7|1|0|A|408
1VQ7|1|0|U|409
1VQ7|1|0|A|410
1VQ7|1|0|A|411
1VQ7|1|0|C|412
*
1VQ7|1|0|G|428
1VQ7|1|0|A|429
1VQ7|1|0|A|430
1VQ7|1|0|G|431

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain M

50S Ribosomal Protein L15E