J4_1VQK_007
3D structure
- PDB id
- 1VQK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- GACUG*CAUAG*UGAAU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_1VQK_007 not in the Motif Atlas
- Homologous match to J4_4V9F_007
- Geometric discrepancy: 0.0457
- The information below is about J4_4V9F_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
1VQK|1|0|G|1828
1VQK|1|0|A|1829
1VQK|1|0|C|1830
1VQK|1|0|U|1831
1VQK|1|0|G|1832
*
1VQK|1|0|C|1844
1VQK|1|0|A|1845
1VQK|1|0|U|1846
1VQK|1|0|A|1847
1VQK|1|0|G|1848
*
1VQK|1|0|U|1883
1VQK|1|0|G|1884
1VQK|1|0|A|1885
1VQK|1|0|A|1886
1VQK|1|0|U|1887
*
1VQK|1|0|A|2015
1VQK|1|0|U|2016
1VQK|1|0|U|2017
1VQK|1|0|A|2018
1VQK|1|0|A|2019
1VQK|1|0|C|2020
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain A
- 50S ribosomal protein L2P
- Chain Z
- 50S ribosomal protein L37Ae
Coloring options: