3D structure

PDB id
1VQN (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of CC-HPMN AND CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
UC*GGUUAG*CC*GUCCGUA
Length
17 nucleotides
Bulged bases
1VQN|1|0|U|1447
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_1VQN_005 not in the Motif Atlas
Homologous match to J4_4V9F_005
Geometric discrepancy: 0.0329
The information below is about J4_4V9F_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_10313.5
Basepair signature
cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
5

Unit IDs

1VQN|1|0|U|1419
1VQN|1|0|C|1420
*
1VQN|1|0|G|1444
1VQN|1|0|G|1445
1VQN|1|0|U|1446
1VQN|1|0|U|1447
1VQN|1|0|A|1448
1VQN|1|0|G|1449
*
1VQN|1|0|C|1513
1VQN|1|0|C|1514
*
1VQN|1|0|G|1672
1VQN|1|0|U|1673
1VQN|1|0|C|1674
1VQN|1|0|C|1675
1VQN|1|0|G|1676
1VQN|1|0|U|1677
1VQN|1|0|A|1678

Current chains

Chain 0
23S ribosomal rna

Nearby chains

Chain 2
50S ribosomal protein L39e
Chain P
50S ribosomal protein L19E
Chain S
50S ribosomal protein L23P
Chain V
50S ribosomal protein L29P

Coloring options:


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