J4_1VQN_008

3D structure

PDB id

1VQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CC-HPMN AND CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

1VQN|1|0|U|2012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1VQN_008 not in the Motif Atlas

Homologous match to J4_4V9F_008

Geometric discrepancy: 0.0587

The information below is about J4_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

1VQN|1|0|C|1889
1VQN|1|0|U|1890
1VQN|1|0|G|1891
*
1VQN|1|0|C|1946
1VQN|1|0|G|1947
*
1VQN|1|0|C|1965
1VQN|1|0|U|1966
1VQN|1|0|U|1967
1VQN|1|0|A|1968
1VQN|1|0|A|1969
1VQN|1|0|G|1970
1VQN|1|0|G|1971
1VQN|1|0|U|1972
1VQN|1|0|A|1973
1VQN|1|0|G|1974
*
1VQN|1|0|U|2008
1VQN|1|0|G|2009
1VQN|1|0|A|2010
1VQN|1|0|A|2011
1VQN|1|0|U|2012
1VQN|1|0|G|2013

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain A

50S ribosomal protein L2P