J4_1VQO_001

3D structure

PDB id

1VQO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

1VQO|1|0|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1VQO_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0334

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

1VQO|1|0|C|239
1VQO|1|0|C|240
*
1VQO|1|0|G|379
1VQO|1|0|A|380
1VQO|1|0|G|381
1VQO|1|0|U|382
1VQO|1|0|A|383
1VQO|1|0|G|384
*
1VQO|1|0|C|405
1VQO|1|0|G|406
1VQO|1|0|A|407
1VQO|1|0|A|408
1VQO|1|0|U|409
1VQO|1|0|A|410
1VQO|1|0|A|411
1VQO|1|0|C|412
*
1VQO|1|0|G|428
1VQO|1|0|A|429
1VQO|1|0|A|430
1VQO|1|0|G|431

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain M

50S Ribosomal Protein L15E