J4_1VQO_008

3D structure

PDB id

1VQO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

1VQO|1|0|U|2012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1VQO_008 not in the Motif Atlas

Homologous match to J4_4V9F_008

Geometric discrepancy: 0.0602

The information below is about J4_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

1VQO|1|0|C|1889
1VQO|1|0|U|1890
1VQO|1|0|G|1891
*
1VQO|1|0|C|1946
1VQO|1|0|G|1947
*
1VQO|1|0|C|1965
1VQO|1|0|U|1966
1VQO|1|0|U|1967
1VQO|1|0|A|1968
1VQO|1|0|A|1969
1VQO|1|0|G|1970
1VQO|1|0|G|1971
1VQO|1|0|U|1972
1VQO|1|0|A|1973
1VQO|1|0|G|1974
*
1VQO|1|0|U|2008
1VQO|1|0|G|2009
1VQO|1|0|A|2010
1VQO|1|0|A|2011
1VQO|1|0|U|2012
1VQO|1|0|G|2013

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain A

50S ribosomal protein L2P