J4_1VQP_001

3D structure

PDB id

1VQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.25 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

1VQP|1|0|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1VQP_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0326

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

1VQP|1|0|C|239
1VQP|1|0|C|240
*
1VQP|1|0|G|379
1VQP|1|0|A|380
1VQP|1|0|G|381
1VQP|1|0|U|382
1VQP|1|0|A|383
1VQP|1|0|G|384
*
1VQP|1|0|C|405
1VQP|1|0|G|406
1VQP|1|0|A|407
1VQP|1|0|A|408
1VQP|1|0|U|409
1VQP|1|0|A|410
1VQP|1|0|A|411
1VQP|1|0|C|412
*
1VQP|1|0|G|428
1VQP|1|0|A|429
1VQP|1|0|A|430
1VQP|1|0|G|431

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain M

50S Ribosomal Protein L15E