J4_1VQP_007

3D structure

PDB id

1VQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.25 Å

Loop

Sequence

GACUG*CAUAG*UGAAU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1VQP_007 not in the Motif Atlas

Homologous match to J4_4V9F_007

Geometric discrepancy: 0.0434

The information below is about J4_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_07509.2

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

3

Unit IDs

1VQP|1|0|G|1828
1VQP|1|0|A|1829
1VQP|1|0|C|1830
1VQP|1|0|U|1831
1VQP|1|0|G|1832
*
1VQP|1|0|C|1844
1VQP|1|0|A|1845
1VQP|1|0|U|1846
1VQP|1|0|A|1847
1VQP|1|0|G|1848
*
1VQP|1|0|U|1883
1VQP|1|0|G|1884
1VQP|1|0|A|1885
1VQP|1|0|A|1886
1VQP|1|0|U|1887
*
1VQP|1|0|A|2015
1VQP|1|0|U|2016
1VQP|1|0|U|2017
1VQP|1|0|A|2018
1VQP|1|0|A|2019
1VQP|1|0|C|2020

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae