J4_1VVJ_001

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

1VVJ|1|QA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1VVJ_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0866

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

1VVJ|1|QA|G|115
1VVJ|1|QA|A|116
1VVJ|1|QA|G|117
1VVJ|1|QA|U|118
1VVJ|1|QA|A|119
1VVJ|1|QA|A|120
1VVJ|1|QA|C|121
1VVJ|1|QA|G|122
*
1VVJ|1|QA|U|239
1VVJ|1|QA|C|240
*
1VVJ|1|QA|G|286
1VVJ|1|QA|U|287
1VVJ|1|QA|A|288
1VVJ|1|QA|G|289
*
1VVJ|1|QA|C|311
1VVJ|1|QA|C|312

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QP

30S ribosomal protein S16

Chain QQ

30S ribosomal protein S17