J4_1VVJ_009

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

1VVJ|1|RA|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1VVJ_009 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.1058

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

1VVJ|1|RA|U|1313
1VVJ|1|RA|C|1314
*
1VVJ|1|RA|G|1338
1VVJ|1|RA|G|1339
1VVJ|1|RA|U|1340
1VVJ|1|RA|U|1341
1VVJ|1|RA|A|1342
1VVJ|1|RA|G|1343
*
1VVJ|1|RA|C|1404
1VVJ|1|RA|U|1405
*
1VVJ|1|RA|A|1597
1VVJ|1|RA|C|1598
1VVJ|1|RA|C|1599
1VVJ|1|RA|C|1600
1VVJ|1|RA|G|1601
1VVJ|1|RA|U|1602
1VVJ|1|RA|A|1603

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L35

Chain RX

50S ribosomal protein L23