J4_9DFE_005

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

9DFE|1|1A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9DFE|1|1A|U|1313
9DFE|1|1A|C|1314
*
9DFE|1|1A|G|1338
9DFE|1|1A|G|1339
9DFE|1|1A|U|1340
9DFE|1|1A|U|1341
9DFE|1|1A|A|1342
9DFE|1|1A|G|1343
*
9DFE|1|1A|C|1404
9DFE|1|1A|U|1405
*
9DFE|1|1A|A|1597
9DFE|1|1A|C|1598
9DFE|1|1A|C|1599
9DFE|1|1A|C|1600
9DFE|1|1A|G|1601
9DFE|1|1A|U|1602
9DFE|1|1A|A|1603

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23