J4_1VWW_001

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCUCC*GGCCGGGCCACC*GGAGGGGCCACGCGCGCGUC*GACGGCGGAGCGA

Length

50 nucleotides

Bulged bases

1VWW|1|5|C|1237, 1VWW|1|5|G|1273

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VWW|1|5|U|980
1VWW|1|5|C|981
1VWW|1|5|U|982
1VWW|1|5|C|983
1VWW|1|5|C|984
*
1VWW|1|5|G|1069
1VWW|1|5|G|1070
1VWW|1|5|C|1071
1VWW|1|5|C|1072
1VWW|1|5|G|1073
1VWW|1|5|G|1074
1VWW|1|5|G|1075
1VWW|1|5|C|1076
1VWW|1|5|C|1077
1VWW|1|5|A|1078
1VWW|1|5|C|1079
1VWW|1|5|C|1080
*
1VWW|1|5|G|1220
1VWW|1|5|G|1221
1VWW|1|5|A|1222
1VWW|1|5|G|1232
1VWW|1|5|G|1233
1VWW|1|5|G|1234
1VWW|1|5|G|1235
1VWW|1|5|C|1236
1VWW|1|5|C|1237
1VWW|1|5|A|1238
1VWW|1|5|C|1239
1VWW|1|5|G|1240
1VWW|1|5|C|1241
1VWW|1|5|G|1242
1VWW|1|5|C|1243
1VWW|1|5|G|1244
1VWW|1|5|C|1245
1VWW|1|5|G|1246
1VWW|1|5|U|1247
1VWW|1|5|C|1248
*
1VWW|1|5|G|1262
1VWW|1|5|A|1263
1VWW|1|5|C|1264
1VWW|1|5|G|1265
1VWW|1|5|G|1266
1VWW|1|5|C|1267
1VWW|1|5|G|1268
1VWW|1|5|G|1269
1VWW|1|5|A|1270
1VWW|1|5|G|1271
1VWW|1|5|C|1272
1VWW|1|5|G|1273
1VWW|1|5|A|1274

Current chains

Chain 5

28S ribosomal RNA

Nearby chains