J4_1VWW_002

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUUCC*GGGUCAG*UCCG*CGGGCCGUAC

Length

27 nucleotides

Bulged bases

1VWW|1|5|U|2408, 1VWW|1|5|U|2436, 1VWW|1|5|C|2437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VWW|1|5|G|2406
1VWW|1|5|G|2407
1VWW|1|5|U|2408
1VWW|1|5|U|2409
1VWW|1|5|C|2410
1VWW|1|5|C|2411
*
1VWW|1|5|G|2433
1VWW|1|5|G|2434
1VWW|1|5|G|2435
1VWW|1|5|U|2436
1VWW|1|5|C|2437
1VWW|1|5|A|2438
1VWW|1|5|G|2439
*
1VWW|1|5|U|2538
1VWW|1|5|C|2539
1VWW|1|5|C|2540
1VWW|1|5|G|2541
*
1VWW|1|5|C|2775
1VWW|1|5|G|2776
1VWW|1|5|G|2777
1VWW|1|5|G|2778
1VWW|1|5|C|2779
1VWW|1|5|C|2780
1VWW|1|5|G|2781
1VWW|1|5|U|2782
1VWW|1|5|A|2783
1VWW|1|5|C|2784

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA