J4_1VWW_003

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGGG*UUGUGAA*UGGAAAG*UCC

Length

21 nucleotides

Bulged bases

1VWW|1|5|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VWW|1|5|G|2617
1VWW|1|5|G|2618
1VWW|1|5|G|2619
1VWW|1|5|G|2620
*
1VWW|1|5|U|2636
1VWW|1|5|U|2637
1VWW|1|5|G|2638
1VWW|1|5|U|2639
1VWW|1|5|G|2640
1VWW|1|5|A|2641
1VWW|1|5|A|2642
*
1VWW|1|5|U|2692
1VWW|1|5|G|2693
1VWW|1|5|G|2694
1VWW|1|5|A|2695
1VWW|1|5|A|2696
1VWW|1|5|A|2697
1VWW|1|5|G|2698
*
1VWW|1|5|U|2718
1VWW|1|5|C|2719
1VWW|1|5|C|2720

Current chains

Chain 5

28S ribosomal RNA

Nearby chains