J4_1VY4_006
3D structure
- PDB id
- 1VY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- A(4SU)AG*CAG*CGU(7MG)UCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 1VY4|1|AY|4SU|8, 1VY4|1|AY|U|47, 1VY4|1|AY|C|48
- QA status
- Modified nucleotides: 4SU, 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_1VY4_006 not in the Motif Atlas
- Homologous match to J4_3WQY_001
- Geometric discrepancy: 0.2634
- The information below is about J4_3WQY_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
1VY4|1|AY|A|7
1VY4|1|AY|4SU|8
1VY4|1|AY|A|9
1VY4|1|AY|G|10
*
1VY4|1|AY|C|25
1VY4|1|AY|A|26
1VY4|1|AY|G|27
*
1VY4|1|AY|C|43
1VY4|1|AY|G|44
1VY4|1|AY|U|45
1VY4|1|AY|7MG|46
1VY4|1|AY|U|47
1VY4|1|AY|C|48
1VY4|1|AY|C|49
*
1VY4|1|AY|G|65
1VY4|1|AY|U|66
Current chains
- Chain AY
- E-site tRNA
Nearby chains
- Chain AG
- 30S ribosomal protein S7
- Chain B6
- 50S ribosomal protein L33
Coloring options: