J4_1VY4_017

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

1VY4|1|CA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1VY4_017 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0523

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

1VY4|1|CA|G|115
1VY4|1|CA|A|116
1VY4|1|CA|G|117
1VY4|1|CA|U|118
1VY4|1|CA|A|119
1VY4|1|CA|A|120
1VY4|1|CA|C|121
1VY4|1|CA|G|122
*
1VY4|1|CA|U|239
1VY4|1|CA|C|240
*
1VY4|1|CA|G|286
1VY4|1|CA|U|287
1VY4|1|CA|A|288
1VY4|1|CA|G|289
*
1VY4|1|CA|C|311
1VY4|1|CA|C|312

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CP

30S ribosomal protein S16

Chain CQ

30S ribosomal protein S17