J4_1VY5_006
3D structure
- PDB id
- 1VY5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- A(4SU)AG*CAG*CGU(7MG)UCCUU*GAGU
- Length
- 20 nucleotides
- Bulged bases
- 1VY5|1|AY|4SU|8, 1VY5|1|AY|U|47, 1VY5|1|AY|C|48
- QA status
- Modified nucleotides: 4SU, 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_1VY5_006 not in the Motif Atlas
- Homologous match to J4_7U2I_014
- Geometric discrepancy: 0.2827
- The information below is about J4_7U2I_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_47701.1
- Basepair signature
- cWW-F-F-cWW-F-cWW-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
1VY5|1|AY|A|7
1VY5|1|AY|4SU|8
1VY5|1|AY|A|9
1VY5|1|AY|G|10
*
1VY5|1|AY|C|25
1VY5|1|AY|A|26
1VY5|1|AY|G|27
*
1VY5|1|AY|C|43
1VY5|1|AY|G|44
1VY5|1|AY|U|45
1VY5|1|AY|7MG|46
1VY5|1|AY|U|47
1VY5|1|AY|C|48
1VY5|1|AY|C|49
1VY5|1|AY|U|50
1VY5|1|AY|U|51
*
1VY5|1|AY|G|63
1VY5|1|AY|A|64
1VY5|1|AY|G|65
1VY5|1|AY|U|66
Current chains
- Chain AY
- E-site tRNA
Nearby chains
- Chain AG
- 30S ribosomal protein S7
- Chain AK
- 30S ribosomal protein S11
- Chain B6
- 50S ribosomal protein L33
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