J4_1VY5_012

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GAC*GC*GG*CC

Length

9 nucleotides

Bulged bases

1VY5|1|BA|A|1445

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1VY5_012 not in the Motif Atlas

Homologous match to J4_9DFE_006

Geometric discrepancy: 0.1022

The information below is about J4_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

1VY5|1|BA|G|1444
1VY5|1|BA|A|1445
1VY5|1|BA|C|1445|||A
*
1VY5|1|BA|G|1466
1VY5|1|BA|C|1467
*
1VY5|1|BA|G|1525
1VY5|1|BA|G|1526
*
1VY5|1|BA|C|1546
1VY5|1|BA|C|1547

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains