Motif J4_75575.3 Version J4_75575.3 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | break | 5 | 6 | break | 7 | 8 | 1-8 | 2-3 | 4-5 | 6-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_4V9F_006 | 4V9F | 0.4827 | 0 | 0 | LSU rRNA | C | 1551 | G | 1552 | * | U | 1569 | C | 1570 | * | G | 1627 | G | 1628 | * | C | 1633 | G | 1634 | cWW | cWW | cWW | cWW |
| 2 | J4_9E6Q_006 | 9E6Q | 0.2039 | 0 | 1 | LSU rRNA | G | 1594 | G | 1595 | * | C | 1612 | U | 1613 | * | A | 1670 | G | 1671 | * | U | 1688 | C | 1689 | cWW | cWW | cWW | cWW |
| 3 | J4_8OI5_005 | 8OI5 | 0.1345 | 0 | 1 | LSU rRNA | G | 1670 | G | 1671 | * | C | 1689 | U | 1690 | * | A | 1748 | G | 1749 | * | U | 1768 | C | 1769 | cWW | cWW | cWW | cWW |
| 4 | J4_9AXU_006 | 9AXU | 0.0000 | 0 | 2 | LSU rRNA | G | 1709 | G | 1710 | * | U | 1728 | U | 1729 | * | A | 1792 | G | 1793 | * | U | 1813 | C | 1814 | cWW | cWW | cWW | cWW |
| 5 | J4_9H3G_006 | 9H3G | 0.1688 | 0 | A | LSU rRNA | G | 1674 | G | 1675 | * | U | 1693 | U | 1694 | * | A | 1753 | G | 1754 | * | U | 1774 | C | 1775 | cWW | cWW | cWW | cWW |
| 6 | J4_9NLN_001 | 9NLN | 0.2209 | 0 | C | RNA (CVB3 IRES Domain V) | A | 35 | G | 36 | * | U | 67 | C | 68 | * | G | 74 | G | 75 | * | C | 80 | U | 81 | cWW | cWW | cWW | cWW |
| 7 | J4_8B0X_010 | 8B0X | 0.2029 | 0 | a | LSU rRNA | G | 1446 | G | 1447 | * | U | 1468 | U | 1469 | * | A | 1527 | C | 1528 | * | G | 1548 | C | 1549 | cWW | cWW | cWW | cWW |
| 8 | J4_9DFE_006 | 9DFE | 0.4663 | 1 | 1A | LSU rRNA | G | 1444 | C | 1445|||A | * | G | 1466 | C | 1467 | * | G | 1525 | G | 1526 | * | C | 1546 | C | 1547 | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GG*CU*AG*UC | 2 |
| GG*UU*AG*UC | 2 |
| CG*UC*GG*CG | 1 |
| AG*UC*GG*CU | 1 |
| GG*UU*AC*GC | 1 |
| GAC*GC*GG*CC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *** | 7 |
| A*** | 1 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (8)
- Basepair signature
- cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.13 | Avg 0.30 | Max 0.51
Coloring options: