J4_1VY5_017

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

1VY5|1|CA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1VY5_017 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0599

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

1VY5|1|CA|G|115
1VY5|1|CA|A|116
1VY5|1|CA|G|117
1VY5|1|CA|U|118
1VY5|1|CA|A|119
1VY5|1|CA|A|120
1VY5|1|CA|C|121
1VY5|1|CA|G|122
*
1VY5|1|CA|U|239
1VY5|1|CA|C|240
*
1VY5|1|CA|G|286
1VY5|1|CA|U|287
1VY5|1|CA|A|288
1VY5|1|CA|G|289
*
1VY5|1|CA|C|311
1VY5|1|CA|C|312

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CP

30S ribosomal protein S16

Chain CQ

30S ribosomal protein S17