J4_1VY5_022
3D structure
- PDB id
- 1VY5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- GGA(4SU)AG*CAG*CGU(7MG)UCC*GUCC
- Length
- 20 nucleotides
- Bulged bases
- 1VY5|1|CY|4SU|8, 1VY5|1|CY|U|47, 1VY5|1|CY|C|48
- QA status
- Modified nucleotides: 4SU, 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_1VY5_022 not in the Motif Atlas
- Homologous match to J4_6GSK_031
- Geometric discrepancy: 0.5217
- The information below is about J4_6GSK_031
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_13620.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cHS-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
1VY5|1|CY|G|5
1VY5|1|CY|G|6
1VY5|1|CY|A|7
1VY5|1|CY|4SU|8
1VY5|1|CY|A|9
1VY5|1|CY|G|10
*
1VY5|1|CY|C|25
1VY5|1|CY|A|26
1VY5|1|CY|G|27
*
1VY5|1|CY|C|43
1VY5|1|CY|G|44
1VY5|1|CY|U|45
1VY5|1|CY|7MG|46
1VY5|1|CY|U|47
1VY5|1|CY|C|48
1VY5|1|CY|C|49
*
1VY5|1|CY|G|65
1VY5|1|CY|U|66
1VY5|1|CY|C|67
1VY5|1|CY|C|68
Current chains
- Chain CY
- E-site tRNA
Nearby chains
- Chain CG
- 30S ribosomal protein S7
- Chain CK
- 30S ribosomal protein S11
- Chain D6
- 50S ribosomal protein L33
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: