J4_1VY6_003
3D structure
- PDB id
- 1VY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GGG*CGAAAG*CCCUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 1VY6|1|AA|G|576, 1VY6|1|AA|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_1VY6_003 not in the Motif Atlas
- Homologous match to J4_4LFB_003
- Geometric discrepancy: 0.0522
- The information below is about J4_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
1VY6|1|AA|G|575
1VY6|1|AA|G|576
1VY6|1|AA|G|577
*
1VY6|1|AA|C|764
1VY6|1|AA|G|765
1VY6|1|AA|A|766
1VY6|1|AA|A|767
1VY6|1|AA|A|768
1VY6|1|AA|G|769
*
1VY6|1|AA|C|810
1VY6|1|AA|C|811
1VY6|1|AA|C|812
1VY6|1|AA|U|813
1VY6|1|AA|A|814
1VY6|1|AA|A|815
1VY6|1|AA|A|816
1VY6|1|AA|C|817
1VY6|1|AA|G|818
1VY6|1|AA|A|819
1VY6|1|AA|U|820
1VY6|1|AA|G|821
*
1VY6|1|AA|C|879
1VY6|1|AA|C|880
Current chains
- Chain AA
- 16S Ribosomal RNA
Nearby chains
- Chain AH
- 30S ribosomal protein S8
- Chain AL
- 30S ribosomal protein S12
- Chain AO
- 30S ribosomal protein S15
- Chain AQ
- 30S ribosomal protein S17
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: