J4_1W2B_001

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

1W2B|1|0|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1W2B_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0571

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

1W2B|1|0|C|239
1W2B|1|0|C|240
*
1W2B|1|0|G|379
1W2B|1|0|A|380
1W2B|1|0|G|381
1W2B|1|0|U|382
1W2B|1|0|A|383
1W2B|1|0|G|384
*
1W2B|1|0|C|405
1W2B|1|0|G|406
1W2B|1|0|A|407
1W2B|1|0|A|408
1W2B|1|0|U|409
1W2B|1|0|A|410
1W2B|1|0|A|411
1W2B|1|0|C|412
*
1W2B|1|0|G|428
1W2B|1|0|A|429
1W2B|1|0|A|430
1W2B|1|0|G|431

Current chains

Chain 0

23S RRNA

Nearby chains

Chain L

50S RIBOSOMAL PROTEIN L15E