J4_1W2B_008

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

1W2B|1|0|U|2012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1W2B_008 not in the Motif Atlas

Homologous match to J4_4V9F_008

Geometric discrepancy: 0.0657

The information below is about J4_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

1W2B|1|0|C|1889
1W2B|1|0|U|1890
1W2B|1|0|G|1891
*
1W2B|1|0|C|1946
1W2B|1|0|G|1947
*
1W2B|1|0|C|1965
1W2B|1|0|U|1966
1W2B|1|0|U|1967
1W2B|1|0|A|1968
1W2B|1|0|A|1969
1W2B|1|0|G|1970
1W2B|1|0|G|1971
1W2B|1|0|U|1972
1W2B|1|0|A|1973
1W2B|1|0|G|1974
*
1W2B|1|0|U|2008
1W2B|1|0|G|2009
1W2B|1|0|A|2010
1W2B|1|0|A|2011
1W2B|1|0|U|2012
1W2B|1|0|G|2013

Current chains

Chain 0

23S RRNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L2P