J4_1Y69_003

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

1Y69|1|0|G|1284, 1Y69|1|0|A|1285, 1Y69|1|0|U|1286, 1Y69|1|0|A|1287, 1Y69|1|0|C|1663, 1Y69|1|0|G|1664

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1Y69_003 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.2525

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

1Y69|1|0|C|1283
1Y69|1|0|G|1284
1Y69|1|0|A|1285
1Y69|1|0|U|1286
1Y69|1|0|A|1287
1Y69|1|0|A|1288
1Y69|1|0|A|1289
*
1Y69|1|0|U|1307
1Y69|1|0|C|1308
*
1Y69|1|0|G|1662
1Y69|1|0|C|1663
1Y69|1|0|G|1664
1Y69|1|0|C|1665
*
1Y69|1|0|G|1992
1Y69|1|0|G|1993

Current chains

Chain 0

23S ribosomal RNA

Nearby chains