J4_1Y69_004

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

GGUUC*GGAAAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

1Y69|1|0|G|1324, 1Y69|1|0|A|1354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1Y69_004 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.3158

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.2

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

1Y69|1|0|G|1323
1Y69|1|0|G|1324
1Y69|1|0|U|1325
1Y69|1|0|U|1326
1Y69|1|0|C|1327
*
1Y69|1|0|G|1351
1Y69|1|0|G|1352
1Y69|1|0|A|1353
1Y69|1|0|A|1354
1Y69|1|0|A|1355
1Y69|1|0|G|1356
*
1Y69|1|0|C|1417
1Y69|1|0|C|1418
*
1Y69|1|0|G|1613
1Y69|1|0|C|1614
1Y69|1|0|C|1615
1Y69|1|0|C|1616
1Y69|1|0|G|1617
1Y69|1|0|U|1618
1Y69|1|0|A|1619
1Y69|1|0|C|1620

Current chains

Chain 0

23S ribosomal RNA

Nearby chains