J4_1Y69_008

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

GAGU*AAC*GGAACG*CAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1Y69_008 not in the Motif Atlas

Homologous match to J4_7A0S_010

Geometric discrepancy: 0.1227

The information below is about J4_7A0S_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_54165.1

Basepair signature

cWW-F-F-F-cWW-cWW-cWW-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

1Y69|1|0|G|2622
1Y69|1|0|A|2623
1Y69|1|0|G|2624
1Y69|1|0|U|2625
*
1Y69|1|0|A|2653
1Y69|1|0|A|2654
1Y69|1|0|C|2655
*
1Y69|1|0|G|2711
1Y69|1|0|G|2712
1Y69|1|0|A|2713
1Y69|1|0|A|2714
1Y69|1|0|C|2715
1Y69|1|0|G|2716
*
1Y69|1|0|C|2748
1Y69|1|0|A|2749
1Y69|1|0|G|2750
1Y69|1|0|C|2751

Current chains

Chain 0

23S ribosomal RNA

Nearby chains